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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_126358193_126359637_F

Intron Information:

Intron Rank:
131617
Intron Class:
major
Intron Phase:
Intron Coordinates:
126358193 - 126359637
Intron Length:
1445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCAAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTCTCCAAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
70.8
39.2
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
67.8
0.4
1
63.5
35.9
Minor 5ss
34.7
-1.7
3.2
46.8
42.3
Minor BPS
60.4
0.32
2
76.13
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020645
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037523
126358148 - 126362534
4387