Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_126360432_126362091_F

Intron Information:

Intron Rank:

131619

Intron Class:

major

Intron Phase:

Intron Coordinates:

126360432 - 126362091

Intron Length:

1660

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGTGAT

5'SS Class:

strong_major

3'SS Sequence:

TTTAATTCTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTATTTTAAAA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

83.2

28.5

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

83.4

0.75

0.8

77.7

36.2

Minor 5ss

34.5

-1.8

3.3

45.9

43.7

Minor BPS

68.2

0.57

1.4

76.88

33.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020645

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037523

126358148 - 126362534

4387