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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12637232_12648322_R

Intron Information:

Intron Rank:
147687
Intron Class:
major
Intron Phase:
Intron Coordinates:
12637232 - 12648322
Intron Length:
11091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTAATAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTTCTTTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.9
31.6
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
70.3
0.46
1.1
72.1
36.1
Minor 5ss
33.8
-1.8
3.7
49.2
47.3
Minor BPS
88
1.19
0.8
91.01
22.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026803
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046867
12633059 - 12648375
15317