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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_126419514_126420885_F

Intron Information:

Intron Rank:
151110
Intron Class:
major
Intron Phase:
Intron Coordinates:
126419514 - 126420885
Intron Length:
1372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTCAA
5'SS Class:
strong_major
3'SS Sequence:
AACATTTCTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTTTTTTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
74.3
38
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
72.9
0.52
0.9
65.4
40.2
Minor 5ss
32.5
-2
3
40.8
45.4
Minor BPS
71
0.66
1.3
76.89
33.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031178
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035296
126419376 - 126423324
3949