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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_126419514_126425418_F

Intron Information:

Intron Rank:
151111
Intron Class:
major
Intron Phase:
Intron Coordinates:
126419514 - 126425418
Intron Length:
5905

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCGTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTGTTTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
74.3
38
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
80.8
0.69
0.8
73.6
37
Minor 5ss
32.5
-2
3
40.8
45.4
Minor BPS
62.5
0.39
1.7
74.03
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031178
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038108
126418491 - 126425673
7183