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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12652144_12655316_R

Intron Information:

Intron Rank:
147683
Intron Class:
major
Intron Phase:
Intron Coordinates:
12652144 - 12655316
Intron Length:
3173

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CTT|GCAAGTCTC
5'SS Class:
major
3'SS Sequence:
ATCTCTATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
ATCTCTATTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.4
75.7
36.3
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
79.8
0.67
0.9
73.3
35.2
Minor 5ss
31
-2.2
4.1
50.6
40.1
Minor BPS
51
0.03
1.9
66.33
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026803
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038815
12648412 - 12655420
7009
ENSAPLT00000029243
12648412 - 12655420
7009