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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_126523048_126532739_F

Intron Information:

Intron Rank:
147936
Intron Class:
major
Intron Phase:
Intron Coordinates:
126523048 - 126532739
Intron Length:
9692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAA
U12 Branch Point Sequence:
ATTTTTTTGATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
82.9
23.9
Major BPS
69
0.47
1
69.9
32.6
Major PPT
78.8
0.65
0.9
77
36.7
Minor 5ss
38.1
-1.3
3
49.4
41.3
Minor BPS
69.8
0.62
1
75.26
29.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029649
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025194
126522229 - 126534215
11987
ENSAPLT00000018617
126522229 - 126547904
25676