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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_126524627_126525111_R

Intron Information:

Intron Rank:
143648
Intron Class:
major
Intron Phase:
Intron Coordinates:
126524627 - 126525111
Intron Length:
485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATACAGT
5'SS Class:
major
3'SS Sequence:
TTTGAATTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
AGTCTTCTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
67.7
43.2
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
75.7
0.58
0.9
66.9
43.8
Minor 5ss
46.5
-0.4
2.8
66.5
44.6
Minor BPS
52.7
0.08
1.6
64.51
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024612
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031734
126509974 - 126525586
15613
ENSAPLT00000018063
126520244 - 126525586
5343
ENSAPLT00000043967
126498884 - 126525586
26703