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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_126532862_126534980_F

Intron Information:

Intron Rank:
147941
Intron Class:
major
Intron Phase:
Intron Coordinates:
126532862 - 126534980
Intron Length:
2119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACGAACT
5'SS Class:
strong_major
3'SS Sequence:
TATTTCCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAA
U12 Branch Point Sequence:
ATTTCCTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
78.3
35.9
Major BPS
69.4
0.48
1.2
63.4
44.3
Major PPT
87
0.83
0.7
81
30.8
Minor 5ss
35
-1.7
3.2
50.3
45.7
Minor BPS
64.5
0.32
1.8
71.23
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029649
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027365
126526085 - 126536339
10255