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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_126535046_126535931_F

Intron Information:

Intron Rank:
147942
Intron Class:
major
Intron Phase:
Intron Coordinates:
126535046 - 126535931
Intron Length:
886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTGGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTTCCTTGGCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
79.7
35.3
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
73.5
0.53
1
69
41.8
Minor 5ss
49
-0.1
2.5
65.8
45.4
Minor BPS
56.1
0.17
3.5
85.91
32.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029649
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027365
126526085 - 126536339
10255