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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_126537196_126547901_F

Intron Information:

Intron Rank:
147938
Intron Class:
major
Intron Phase:
Intron Coordinates:
126537196 - 126547901
Intron Length:
10706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAACC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
AGTTCCGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
74.4
33.9
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
83.8
0.76
0.8
81.1
31
Minor 5ss
34.8
-1.7
2.9
45
42.5
Minor BPS
65.7
0.57
2
83.15
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029649
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048340
126527096 - 126547904
20809
ENSAPLT00000043171
126525004 - 126547904
22901
ENSAPLT00000018617
126522229 - 126547904
25676