Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12683538_12687440_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

12683538 - 12687440

Intron Length:

3903

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATA|GTAATTGGC

5'SS Class:

major

3'SS Sequence:

TTCATATGCTAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ATTTCAT

U12 Branch Point Sequence:

TTTTACTCCATT

Flanking Amino Acid:

SKTMRVLGSYRCLEGFRFYL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.9

0.38

1.1

58.9

38.7

Major BPS

91.2

1.02

0.7

91.7

20.2

Major PPT

59.7

0.22

1.1

40.8

Minor 5ss

-1.7

3.2

45.3

38.1

Minor BPS

53.1

0.18

2.2

81.26

40.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022948

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038675

12683305 - 12687555

4251