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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_127067586_127072697_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
127067586 - 127072697
Intron Length:
5112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTGTATCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
TTTGTTGTATCT
Flanking Amino Acid:
KLSELDINKAEGEGDAQRNP
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.8
22.5
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
80
0.67
0.8
78.1
36.1
Minor 5ss
36
-1.6
2.6
43.5
43.6
Minor BPS
47.6
-0.1
2.3
74.38
43.4

Associated Gene:

Gene:
PKIA
Ensembl Gene ID:
ENSAPLG00000008996
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009352
127067435 - 127072777
5343