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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_127103830_127117158_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
127103830 - 127117158
Intron Length:
13329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTTTTTTAAAG
Flanking Amino Acid:
RTSAALPSCLGEVTVQTGDL
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
87.3
0.84
0.9
89.9
23.6
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
72.6
0.57
1.4
75.95
35.7

Associated Gene:

Gene:
ZC2HC1A
Ensembl Gene ID:
ENSAPLG00000009028
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009409
127103772 - 127137846
34075