Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_127117233_127117861_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

127117233 - 127117861

Intron Length:

629

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTAGC

5'SS Class:

strong_major

3'SS Sequence:

CTTCTGCTTATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTTTAT

U12 Branch Point Sequence:

TTTTCCTTTATT

Flanking Amino Acid:

CGRTFFPAALKKHGPICQKT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.89

0.9

77.9

36.8

Major BPS

71.5

0.54

1.1

63.3

42.8

Major PPT

78.4

0.64

0.8

72.5

32.4

Minor 5ss

36.2

-1.6

2.7

42.7

38.4

Minor BPS

81.6

1.08

1.4

96.2

29.4

Associated Gene:

Gene:

ZC2HC1A

Ensembl Gene ID:

ENSAPLG00000009028

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031921

127104144 - 127137846

33703

ENSAPLT00000009409

127103772 - 127137846

34075