Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_127120537_127121610_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

127120537 - 127121610

Intron Length:

1074

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAACAAA

5'SS Class:

major

3'SS Sequence:

TATTTTGTTACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTAAT

U12 Branch Point Sequence:

AATTGCTTAAAT

Flanking Amino Acid:

TKGKLPTRTQYKPAAVKKAP

Intron Amino Acid Position:

176

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.4

0.65

72.6

33.8

Major BPS

90.7

1.01

0.7

19.9

Major PPT

85.6

0.8

0.9

80.1

37.1

Minor 5ss

32.6

-2

2.9

46.4

Minor BPS

65.2

0.56

1.9

81.26

39.8

Associated Gene:

Gene:

ZC2HC1A

Ensembl Gene ID:

ENSAPLG00000009028

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031921

127104144 - 127137846

33703

ENSAPLT00000009409

127103772 - 127137846

34075