Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_127121708_127122637_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

127121708 - 127122637

Intron Length:

930

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGAAAT

5'SS Class:

strong_major

3'SS Sequence:

CTTAAACTGTAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

ATTACCTTAAAC

Flanking Amino Acid:

QPSGVSKTVVGASSGKALSS

Intron Amino Acid Position:

208

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.9

1.03

0.7

89.8

22.3

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

0.09

1.2

57.4

42.3

Minor 5ss

35.1

-1.7

3.1

48.5

47.2

Minor BPS

74.2

0.74

1.4

79.49

34.7

Associated Gene:

Gene:

ZC2HC1A

Ensembl Gene ID:

ENSAPLG00000009028

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031921

127104144 - 127137846

33703

ENSAPLT00000009409

127103772 - 127137846

34075