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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_127149523_127150958_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
127149523 - 127150958
Intron Length:
1436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTGCCTTAC
5'SS Class:
weak_major
3'SS Sequence:
CTGCCCAGATCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
AGATCCTGACTT
Flanking Amino Acid:
KEKVSGSDGSIGKRWQ*
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57
0.17
1.2
58.5
37.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
57.8
0.18
1
55.8
38.7
Minor 5ss
41.9
-0.9
3.1
55.7
42.5
Minor BPS
53.2
0.18
1.7
69.24
41.4

Associated Gene:

Gene:
IL7
Ensembl Gene ID:
ENSAPLG00000009200
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009567
127149504 - 127158974
9471