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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_127152010_127155668_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
127152010 - 127155668
Intron Length:
3659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTATATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
ACTTCCGTGATT
Flanking Amino Acid:
NILSHDIDELVNMSAEYRDR
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
79.7
35.3
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
85.8
0.81
0.8
80.3
36.7
Minor 5ss
36.1
-1.6
3.1
47.2
42.9
Minor BPS
58.5
0.35
2
76.81
40.4

Associated Gene:

Gene:
IL7
Ensembl Gene ID:
ENSAPLG00000009200
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009567
127149504 - 127158974
9471