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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_127254896_127266050_F

Intron Information:

Intron Rank:
147222
Intron Class:
major
Intron Phase:
Intron Coordinates:
127254896 - 127266050
Intron Length:
11155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGGAGA
5'SS Class:
major
3'SS Sequence:
CCTTTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAC
U12 Branch Point Sequence:
AGTTTTCTAAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
65.7
41.7
Major BPS
70.5
0.51
1
72
33.1
Major PPT
83.5
0.75
0.7
77
31.8
Minor 5ss
25.7
-2.8
2.9
22.2
37.3
Minor BPS
48.7
-0.1
1.9
62.51
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029291
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019566
127254746 - 127267233
12488