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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_127395689_127398807_R

Intron Information:

Intron Rank:
153676
Intron Class:
major
Intron Phase:
Intron Coordinates:
127395689 - 127398807
Intron Length:
3119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAA
U12 Branch Point Sequence:
AACTTATTAAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
88.9
24.9
Major BPS
75.5
0.63
1
66.3
40.4
Major PPT
91.9
0.94
0.6
91.8
19.1
Minor 5ss
39.5
-1.2
2.8
48.3
41.8
Minor BPS
49.4
-0
1.9
59.54
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030168
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043761
127395566 - 127399955
4390
ENSAPLT00000041939
127395566 - 127399955
4390