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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12739687_12741895_R

Intron Information:

Intron Rank:
144264
Intron Class:
major
Intron Phase:
Intron Coordinates:
12739687 - 12741895
Intron Length:
2209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCTTATTTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.7
89.2
17.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.7
0.76
0.8
79.1
32.9
Minor 5ss
36.4
-1.5
2.9
48.7
47.5
Minor BPS
69.9
0.62
1.4
75.77
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024878
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047922
12739263 - 12742369
3107
ENSAPLT00000042088
12739263 - 12745045
5783