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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_127399081_127399508_R

Intron Information:

Intron Rank:
153678
Intron Class:
major
Intron Phase:
Intron Coordinates:
127399081 - 127399508
Intron Length:
428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GGGCTTCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TGAGTTTTATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.4
30.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
69.5
0.44
0.9
66.1
40.8
Minor 5ss
34
-1.8
2.9
41.9
44.8
Minor BPS
49.6
-0
1.7
58.99
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030168
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043761
127395566 - 127399955
4390