About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12742004_12744712_R

Intron Information:

Intron Rank:
144265
Intron Class:
major
Intron Phase:
Intron Coordinates:
12742004 - 12744712
Intron Length:
2709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGATTTTCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GGTTCTTAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.8
1.15
0.6
96.1
12.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
76.7
0.6
0.9
72.5
37.6
Minor 5ss
37.4
-1.4
2.8
50.6
45.9
Minor BPS
67.6
0.63
1.7
81.37
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024878
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042088
12739263 - 12745045
5783