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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_127430935_127434836_R

Intron Information:

Intron Rank:
148405
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
127430935 - 127434836
Intron Length:
3902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGCAG
5'SS Class:
major
3'SS Sequence:
CTCCCCTGCTAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TGGCCTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.2
60.5
45.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
58.5
0.19
1
62.7
32
Minor 5ss
35.6
-1.6
3.3
46.7
48.6
Minor BPS
65.1
0.55
1.4
75.65
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027221
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020251
127426494 - 127435271
8778