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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_127460069_127460714_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
127460069 - 127460714
Intron Length:
646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTATCGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
AAAGACTTAACA
Flanking Amino Acid:
PRNMNIYKYDDMEVKQINKR
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.8
79.3
28.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
78.4
0.64
0.9
73.2
36.9
Minor 5ss
30.7
-2.2
2.6
33.5
35.6
Minor BPS
59.5
0.3
1.6
65.33
40.3

Associated Gene:

Gene:
STMN2
Ensembl Gene ID:
ENSAPLG00000009214
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009601
127437799 - 127472365
34567