Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_127468525_127472154_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

127468525 - 127472154

Intron Length:

3630

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACTGCA

5'SS Class:

strong_major

3'SS Sequence:

TGATGTTTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTGAT

U12 Branch Point Sequence:

CCCTTCTTGATG

Flanking Amino Acid:

AALIERLQEKERHAAEVRRN

Intron Amino Acid Position:

165

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.75

1.1

35.3

Major BPS

83.8

0.84

73.6

41.8

Major PPT

78.4

0.64

69.4

45.8

Minor 5ss

38.5

-1.3

3.1

50.7

45.7

Minor BPS

56.1

0.05

1.4

52.76

43.2

Associated Gene:

Gene:

STMN2

Ensembl Gene ID:

ENSAPLG00000009214

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009601

127437799 - 127472365

34567