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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_127494956_127495645_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
127494956 - 127495645
Intron Length:
690

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGTGC
5'SS Class:
major
3'SS Sequence:
TCTTTTCTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAA
U12 Branch Point Sequence:
AGCATCTTAAGA
Flanking Amino Acid:
LKMLHTAGGKGYFDAHALAM
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
65
42.1
Major BPS
73.4
0.58
0.9
63.7
35.1
Major PPT
83.8
0.76
0.7
80.1
25.4
Minor 5ss
36
-1.6
3.5
50.3
46.3
Minor BPS
52.3
0.07
1.7
58.65
41

Associated Gene:

Gene:
HEY1
Ensembl Gene ID:
ENSAPLG00000007112
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007374
127494218 - 127496450
2233