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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_127496073_127496180_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
127496073 - 127496180
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGAGCG
5'SS Class:
major
3'SS Sequence:
CTCCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAG
U12 Branch Point Sequence:
GCCCGCTCAGCC
Flanking Amino Acid:
EVEKESADENGTPGSVSPSA
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
59.5
39.8
Major BPS
47.4
-0.1
1.6
54.7
43.1
Major PPT
74.8
0.56
0.7
69
24.8
Minor 5ss
24.9
-2.9
3
22.5
36.9
Minor BPS
40.5
-0.7
2
44.68
43.2

Associated Gene:

Gene:
HEY1
Ensembl Gene ID:
ENSAPLG00000007112
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007374
127494218 - 127496450
2233