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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_127627119_127628232_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
127627119 - 127628232
Intron Length:
1114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTATGTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTCTCTTTATGT
Flanking Amino Acid:
SFEEKVENLKFKVGGNKPAG
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.8
90.9
28.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
77.3
0.62
0.9
69.5
41.4
Minor 5ss
45.3
-0.5
2.9
66
45.2
Minor BPS
53.2
0.18
1.9
70.73
46.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030373
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038220
127627002 - 127629640
2639