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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_127747188_127754123_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
127747188 - 127754123
Intron Length:
6936

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGAC
5'SS Class:
major
3'SS Sequence:
TTTCTAATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTTTCTAATT
Flanking Amino Acid:
RLNEPGSAEQESELPSELNN
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
67.4
38.4
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
83.3
0.75
0.8
74.8
38.9
Minor 5ss
28.1
-2.5
3.7
39.6
46.7
Minor BPS
69.2
0.68
1.6
87.82
31.2

Associated Gene:

Gene:
ZBTB10
Ensembl Gene ID:
ENSAPLG00000016560
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047380
127746180 - 127772099
25920