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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_127755022_127769195_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
127755022 - 127769195
Intron Length:
14174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GTTTCATCATCT
Flanking Amino Acid:
EDLSFIKEEAGDSSALIMNK
Intron Amino Acid Position:
636

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
87.7
26.2
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
85.8
0.81
0.7
81.8
29.7
Minor 5ss
39.6
-1.2
2.9
54
43.3
Minor BPS
53
0.17
2.1
78.8
42.7

Associated Gene:

Gene:
ZBTB10
Ensembl Gene ID:
ENSAPLG00000016560
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047380
127746180 - 127772099
25920