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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_127769372_127771793_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
127769372 - 127771793
Intron Length:
2422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTAAC
5'SS Class:
major
3'SS Sequence:
TTCTCTTCCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCTCTTCCATA
Flanking Amino Acid:
RREHVKRHSLVHKKDKKYKC
Intron Amino Acid Position:
695

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
74.1
36.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
80
0.67
0.7
76.3
25.9
Minor 5ss
34.8
-1.7
3
41.6
39.5
Minor BPS
50
-0
1.9
66.76
40.7

Associated Gene:

Gene:
ZBTB10
Ensembl Gene ID:
ENSAPLG00000016560
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047380
127746180 - 127772099
25920