About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_127832576_127834282_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
127832576 - 127834282
Intron Length:
1707

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGGAC
5'SS Class:
major
3'SS Sequence:
TTCTCTCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAA
U12 Branch Point Sequence:
TTCTCTCCAACA
Flanking Amino Acid:
SSPPRVAFGLRKPRGEGKKC
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
67.6
38
Major BPS
61.8
0.29
1.1
69.7
35.6
Major PPT
77.8
0.63
0.8
73.9
29.8
Minor 5ss
28.4
-2.5
3.7
40.2
46.2
Minor BPS
56.1
0.19
1.9
72.2
40

Associated Gene:

Gene:
ZNF704
Ensembl Gene ID:
ENSAPLG00000004604
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021030
127832177 - 127916426
84250
ENSAPLT00000004743
127832464 - 127905743
73280
ENSAPLT00000033176
127832177 - 127916426
84250