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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_127834378_127845154_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
127834378 - 127845154
Intron Length:
10777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGCGA
5'SS Class:
major
3'SS Sequence:
TCTGTATTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTCAT
U12 Branch Point Sequence:
TCTGTATTGACA
Flanking Amino Acid:
YLVHTDHAYQVSPTHNRPAG
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.2
60.5
45.8
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
73
0.52
1
68.7
41.2
Minor 5ss
35.7
-1.6
3.3
48
47.5
Minor BPS
54.1
0.12
1.7
66.63
40.1

Associated Gene:

Gene:
ZNF704
Ensembl Gene ID:
ENSAPLG00000004604
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033176
127832177 - 127916426
84250