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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_127851095_127855071_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
127851095 - 127855071
Intron Length:
3977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTGTTCTTGACA
Flanking Amino Acid:
LVRSPPVRPNESLNGSWKEG
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
65.8
41
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
79.2
0.66
1
76.3
37.8
Minor 5ss
44.3
-0.6
2.9
56
43.7
Minor BPS
78.2
0.88
1.1
81.71
33.5

Associated Gene:

Gene:
ZNF704
Ensembl Gene ID:
ENSAPLG00000004604
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033176
127832177 - 127916426
84250
ENSAPLT00000021030
127832177 - 127916426
84250
ENSAPLT00000004743
127832464 - 127905743
73280