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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_127855176_127899973_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
127855176 - 127899973
Intron Length:
44798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CACTGTTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
CTCCTCTTCACT
Flanking Amino Acid:
VSSNIDVPPARKSSEELDMD
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
74.9
37
Major BPS
77.5
0.68
1
79.6
33
Major PPT
79.5
0.66
0.9
76.2
37.5
Minor 5ss
30.2
-2.3
3.3
38.5
46.8
Minor BPS
56.6
0.29
1.8
72.32
44.9

Associated Gene:

Gene:
ZNF704
Ensembl Gene ID:
ENSAPLG00000004604
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033176
127832177 - 127916426
84250
ENSAPLT00000021030
127832177 - 127916426
84250
ENSAPLT00000004743
127832464 - 127905743
73280