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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_127953340_127955507_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
127953340 - 127955507
Intron Length:
2168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCAAC
5'SS Class:
major
3'SS Sequence:
TAATTTTCTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCTTTATAATT
Flanking Amino Acid:
EQNGALSNGEVLSEDSTTAC
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
68.4
38.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.8
0.63
0.9
70.7
40.6
Minor 5ss
33.8
-1.8
2.8
34.7
41.5
Minor BPS
63.2
0.49
1.6
79.74
37

Associated Gene:

Gene:
PAG1
Ensembl Gene ID:
ENSAPLG00000004448
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004560
127946095 - 127983845
37751
ENSAPLT00000030283
127945676 - 128019211
73536