Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_127955605_127956133_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

127955605 - 127956133

Intron Length:

529

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

CTTTGTGTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTAAAT

U12 Branch Point Sequence:

TGTTGATTAAAT

Flanking Amino Acid:

NGDHENLMNVPSEKEVFSHS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.6

0.96

0.8

27.7

Major BPS

73.5

0.58

79.3

29.4

Major PPT

82.1

0.72

0.9

76.3

37.7

Minor 5ss

38.8

-1.3

3.4

43.6

Minor BPS

55.6

0.25

2.1

79.63

41.7

Associated Gene:

Gene:

PAG1

Ensembl Gene ID:

ENSAPLG00000004448

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004560

127946095 - 127983845

37751

ENSAPLT00000030283

127945676 - 128019211

73536