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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_127956186_127958301_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
127956186 - 127958301
Intron Length:
2116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGCTT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTCATTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TGCCTCTTCATT
Flanking Amino Acid:
FLIFLCSSCNREKKSKHQNG
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
75.1
40.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
67.5
0.39
1
71.7
32.1
Minor 5ss
42.8
-0.8
3.4
64.4
47
Minor BPS
52.8
0.17
1.8
69.3
42.1

Associated Gene:

Gene:
PAG1
Ensembl Gene ID:
ENSAPLG00000004448
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030283
127945676 - 128019211
73536
ENSAPLT00000004560
127946095 - 127983845
37751