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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_127981190_127983312_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
127981190 - 127983312
Intron Length:
2123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGCTC
5'SS Class:
major
3'SS Sequence:
ATCTTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAC
U12 Branch Point Sequence:
AACCTCTTAACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
69.7
40.9
Major BPS
77.1
0.67
1
77.9
32.2
Major PPT
89.8
0.9
0.7
88.4
28
Minor 5ss
35.4
-1.7
3.4
50.6
45.9
Minor BPS
67.1
0.52
1.3
67.21
37.9

Associated Gene:

Gene:
PAG1
Ensembl Gene ID:
ENSAPLG00000004448
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004560
127946095 - 127983845
37751