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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_127981190_128019150_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
127981190 - 128019150
Intron Length:
37961

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAC
U12 Branch Point Sequence:
AACCTCTTAACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
92.8
22.7
Major BPS
77.1
0.67
1
77.9
32.2
Major PPT
89.8
0.9
0.7
88.4
28
Minor 5ss
41.7
-0.9
2.9
60.3
44.1
Minor BPS
67.1
0.52
1.3
67.21
37.9

Associated Gene:

Gene:
PAG1
Ensembl Gene ID:
ENSAPLG00000004448
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030283
127945676 - 128019211
73536