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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_128063675_128066822_F

Intron Information:

Intron Rank:
141324
Intron Class:
major
Intron Phase:
Intron Coordinates:
128063675 - 128066822
Intron Length:
3148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TACACAAATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTCTCTTCAGTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
76.5
38.6
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
60.3
0.23
1
51.8
40.6
Minor 5ss
41.9
-0.9
2.8
57.5
41
Minor BPS
56.3
0.28
1.8
75.73
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026101
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023801
128063596 - 128068013
4418