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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_128091878_128093525_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
128091878 - 128093525
Intron Length:
1648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
AGTTCTTGAAAT
Flanking Amino Acid:
GSEPLVDVMFADGDRLIMKG
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
75.2
40.6
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
89.3
0.88
0.6
84.3
23.5
Minor 5ss
34.1
-1.8
3.3
45.5
44.6
Minor BPS
63.1
0.49
1.5
77.79
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027717
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040780
128087571 - 128093653
6083