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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_128104347_128106923_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
128104347 - 128106923
Intron Length:
2577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGGCG
5'SS Class:
major
3'SS Sequence:
TCTTGCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAC
U12 Branch Point Sequence:
GACTTTGTGACA
Flanking Amino Acid:
EGFEEYMKELGVGMAMRKMG
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
62
41.7
Major BPS
71.9
0.54
1.2
75.6
36.6
Major PPT
83.4
0.75
0.8
77.1
31.6
Minor 5ss
29.1
-2.4
3.4
30.6
42.7
Minor BPS
46.3
-0.2
2
54.59
38.5

Associated Gene:

Gene:
FABP5
Ensembl Gene ID:
ENSAPLG00000006597
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046778
128104271 - 128145922
41652
ENSAPLT00000043629
128104271 - 128138826
34556
ENSAPLT00000030966
128104271 - 128140959
36689
ENSAPLT00000006872
128104271 - 128109213
4943