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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_128108173_128108312_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
128108173 - 128108312
Intron Length:
140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTATCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATTTCTTTATCT
Flanking Amino Acid:
RKLVDGQLVVECDMNGVKCI
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
29.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
81.5
0.71
0.8
73.8
36.5
Minor 5ss
35.2
-1.7
2.8
38.4
40.8
Minor BPS
75.8
0.89
1.5
90.23
33.7

Associated Gene:

Gene:
FABP5
Ensembl Gene ID:
ENSAPLG00000006597
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006872
128104271 - 128109213
4943