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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_128108173_128138548_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
128108173 - 128138548
Intron Length:
30376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
GTTCACATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTTTTGTTCACA
Flanking Amino Acid:
RKLVDGQLVVGRVNQTMQFC
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
29.5
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
74.2
0.54
0.9
66
39.4
Minor 5ss
35.2
-1.7
2.8
38.4
40.8
Minor BPS
55.5
0.17
2.4
78.35
38.8

Associated Gene:

Gene:
FABP5
Ensembl Gene ID:
ENSAPLG00000006597
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043629
128104271 - 128138826
34556