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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_128108173_128140693_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
128108173 - 128140693
Intron Length:
32521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
CCATGCTTACTT
Flanking Amino Acid:
RKLVDGQLVVHSAEV*
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
29.5
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
87.6
0.85
0.6
88.2
21.6
Minor 5ss
35.2
-1.7
2.8
38.4
40.8
Minor BPS
48.4
-0
2.1
63.75
47.1

Associated Gene:

Gene:
FABP5
Ensembl Gene ID:
ENSAPLG00000006597
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030966
128104271 - 128140959
36689