About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_128108173_128145249_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
128108173 - 128145249
Intron Length:
37077

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
TGTTCCTTCATT
Flanking Amino Acid:
RKLVDGQLVVTGECYEATPE
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
29.5
Major BPS
75
0.62
1.1
77.2
36
Major PPT
78.3
0.64
0.8
77.9
29.8
Minor 5ss
35.2
-1.7
2.8
38.4
40.8
Minor BPS
73.9
0.83
1.7
88.65
36.5

Associated Gene:

Gene:
FABP5
Ensembl Gene ID:
ENSAPLG00000006597
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046778
128104271 - 128145922
41652