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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_128182331_128182547_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
128182331 - 128182547
Intron Length:
217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTTAT
U12 Branch Point Sequence:
TTTTCTTCAACA
Flanking Amino Acid:
ETTADDRKTKNVITLENGSL
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
83.2
30.8
Major BPS
71.3
0.53
1
61.3
37
Major PPT
84.5
0.78
0.8
81.6
28.9
Minor 5ss
32.4
-2
3
40.7
45.5
Minor BPS
78.6
0.89
1.4
87.68
29.9

Associated Gene:

Gene:
FABP4
Ensembl Gene ID:
ENSAPLG00000006118
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006347
128180748 - 128184054
3307